Media 000570594: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000570594: Whole Body
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000570594
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Halichoeres sanchezi
Object organization
Side
NotApplicable
Orientation
--
Short description
Holotype CT scan
Full description
CT scan of the holotype of a new Halichoeres sp (currently under review), a terminal phase male.
Creator
Ludt, William B.
Date created
October 10, 2023
Date uploaded
October 10, 2023
FILE OBJECT DETAILS Field Definitions
File name
LACM_61379.zip
File format(s)
ZIP archive, TIFF
File size
1.55 GB
Image width
937
Image height
1470
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.034000
Y pixel spacing
0.034000
Z pixel spacing
0.034000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
4,279
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1273, LACM Ichthyology (Natural History Museums of Los Angeles County)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Natural History Museum of Los Angeles County
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2215184
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
LACM:Fish:61379
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
LACM Ichthyology (Natural History Museums of Los Angeles County)
Creator
Ludt, William B.
Event date
September 01, 2023
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
Al 1mm
Exposure time
636ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
90kV
Power
--
Amperage
166uA
Surrounding material
Packing peanuts
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 2 activities
to create
derived
Media 000570594: Whole Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Ludt, William B.
Event date
October 10, 2023
Software
Slicer, Fiji
Description
--
Description attachment
None
Processing Activity 1: Bit Depth Change
Software
Fiji
Description
Converted images from 16bit to 8bit
Processing Activity 2: Crop
Software
Slicer
Description
Cropped images to reduce file size