Media 000600642: Forelimb
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000600642: Forelimb
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Project
· Public
Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000600642
Media type
Mesh
Object element or part
Forelimb
Object represented
Object taxonomy
Alligator mississippiensis
Object organization
Side
Right
Orientation
--
Short description
Right forelimb with elements colored to demonstrate forelimb anatomy
Full description
Skeleton of the right forelimb of a juvenile American alligator, Alligator mississippiensis (specimen UF Herp 21461), a fluid preserved specimen of the collections of the Florida Museum of Natural History at the University of Florida, with elements colored to demonstrate forelimb anatomy. This scene was created by Jaimi Gray (oVert team). Forelimb bones segmented and mesh files generated from CT data using Avizo (version 2020.1). Meshes further edited, repositioned, and colored using Blender and Meshlab.
Data collection funded by oVert Thematic Collections Network (TCN), NSF DBI-1701714 (https://tinyurl.com/oVertwiki)
Creator
Jaimi Gray
Date created
January 30, 2024
Date uploaded
January 30, 2024
FILE OBJECT DETAILS Field Definitions
File name
alligator_forelimb_with_color.ply
File format(s)
PLY
File size
25.7 MB
Points
538037
Polygons
1077642
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
48.650, 63.427, 11.187
Centroid coordinates
7.269, 7.150, 2.992
Units of point coordinates
No Value Entered, Millimeter Default
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(0 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
Blackburn, D.C., et al. 2024. Increasing the impact of vertebrate scientific collections through 3D-imaging: the openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186. https://doi.org/10.1093/biosci/biad120
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
UF:Herp:21461
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
0.2
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
2000
Voltage
100
Power
0.02
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000043453: 16bit Tiffs [CTImageSeries] [Etc].
Processing Details Field Definitions
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000043453: 16bit Tiffs [CTImageSeries] [Etc]
was processed
to create
derived
Media 000600642: Forelimb [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
Jaimi Gray
Event date
January 30, 2024
Software
VG Studio Max & Blender
Description
--
Description attachment
None