Media 000602350: Forelimb
Restricted Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000602350: Forelimb
Restricted Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000602350
Media type
Mesh
Object element or part
Forelimb
Object represented
Object taxonomy
Condylura cristata cristata
Object organization
Side
Right
Orientation
--
Short description
Repositioned forelimb with bone elements colored
Full description
Skeleton of the right forelimb of a star nosed mole, Condylura cristata (specimen YPM Mam 014548), a fluid preserved sepcimen at the Yale Peabody Museum, with elements colored to demonstrate forelimb anatomy. This scene was created by Jaimi Gray (oVert team) using pre-existing mesh files (see below) which were edited to separate, reposition, and color elements in Blender and Meshlab.
Original mesh files made with Volumegraphics VGStudioMax 3.3 from a CT scan produced by a Phoenix V|Tome|X S. The model was generated to complement a learning activity designed during the UF Center for Precollegiate Education and Training workshop “3D Vertebrates: From Museum Shelves to Classrooms.” Scanning and modeling of this specimen was funded by the oVert project at the University of Florida (NSF DBI 1701714, https://tinyurl.com/oVertwiki).
Creator
Jaimi Gray
Date created
February 06, 2024
Date uploaded
February 06, 2024
FILE OBJECT DETAILS Field Definitions
File name
mole_forelimb_with_color.ply
File format(s)
PLY
File size
11.5 MB
Points
240724
Polygons
483613
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
34.336, 18.282, 9.211
Centroid coordinates
-3.236, 2.277, -0.391
Units of point coordinates
No Value Entered, Millimeter Default
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(0 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Yale University
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
Blackburn, D.C., et al. 2024. Increasing the impact of vertebrate scientific collections through 3D-imaging: the openVertebrate (oVert) Thematic Collections Network. BioScience 74: 169–186. https://doi.org/10.1093/biosci/biad120
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
YPM:VZ:YPM MAM 014548
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
0.200098
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1800
Voltage
90
Power
0.018
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000064579: Whole Body [CTImageSeries] [Etc].
Processing Details Field Definitions
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000064579: Whole Body [CTImageSeries] [Etc]
was processed
to create
derived
Media 000602350: Forelimb [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
Jaimi Gray
Event date
February 06, 2024
Software
--
Description
--
Description attachment
None