Media 000607371: Ankle
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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· Public

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GENERAL DETAILS Field Definitions

Media ID
000607371
Media type
Volumetric Image Series
Object element or part
ankle
Object represented
Object taxonomy
Phyllostomus hastatus curaca
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of ankle
Full description
University of Texas High-Resolution X-ray CT Facility Archive 0949 Simmons: Phyllostomus/ankle: Scans of the ankle of Phyllostomus hastatus curaca (AMNH 239876; Peru, Oxapampa Province; Pasco, Nevati, original number MDT-1798, collected by M.D. Tuttle) for Dr. Nancy Simmons of the American Museum of Natural History and Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin. Scanned by Matthew Colbert 24 December 2003. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 1 line (= 0.0347 mm), S.O.D. 100 mm, 1400 views, 2 samples per view, inter-slice spacing 1 line (= 0.0347 mm), field of reconstruction 32.7 mm (maximum field of view 32.77036 mm), reconstruction offset 7300, reconstruction scale 2000. Acquired with 27 slices per rotation. Rotation correction processing done by Rachel Racicot using IDL routine “DoRotationCorrection”. Deleted original slice 28. Total slices = 269.
Creator
Matthew Colbert
Date created
December 24, 2003
Date uploaded
February 27, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
205 MB
Image width
861
Image height
590
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.031900
Y pixel spacing
0.031900
Z pixel spacing
0.034700
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
269

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
American Museum of Natural History
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-0208675
Publisher
oUTCT PEN
Cite as
Nancy Simmons provided access to these data, with data collection funded by NSF DEB-9873663 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:239876 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
December 24, 2003
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000607371: Ankle [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000607371: Ankle [CTImageSeries] [CT] (this media)