Media 000607381: Whole Specimen
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000607381
Media type
Volumetric Image Series
Object element or part
whole specimen
Object represented
Object taxonomy
Phyllostomus hastatus curaca
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of whole specimen
Full description
Simmons: Phyllostomus/whole: Scans of the whole body of Phyllostomus hastatus curaca (AMNH 239876; Peru, Oxapampa Province; Pasco, Nevati, original number MDT-1798, collected by M.D. Tuttle) for Dr. Nancy Simmons of the American Museum of Natural History and Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin. Scanned by Matthew Colbert 23 December 2003. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 1 line (= 0.094 mm), S.O.D. 275 mm, 1600 views, 2 samples per view, inter-slice spacing 1 line (= 0.094 mm), field of reconstruction 90 mm (maximum field of view 90.11849 mm), reconstruction offset 5000, reconstruction scale 1770. Acquired with 27 slices per rotation. Ring-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with default parameters. Rotation correction processing done by Rachel Racicot using IDL routine “DoRotationCorrection”. Total slices = 1107.
Creator
Matthew Colbert
Date created
December 23, 2003
Date uploaded
February 27, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.26 GB
Image width
964
Image height
865
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.088000
Y pixel spacing
0.088000
Z pixel spacing
0.094000
Pixel spacing units
Millimeters
Slice thickness
--
Number of images in set
1,107

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
American Museum of Natural History
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-0208675
Publisher
oUTCT PEN
Cite as
Nancy Simmons provided access to these data, with data collection funded by NSF DEB-9873663 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:239876 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
December 23, 2003
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
--
Flux normalization
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Pixel spacing calibration
--
Shading correction
--
Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
--
Rotation number
--
Phase contrast
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Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000607381: Whole Specimen [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000607381: Whole Specimen [CTImageSeries] [CT] (this media)