Media 000613803: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000613803: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000613803
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Hydrolagus colliei
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - head
Full description
University of Texas High-Resolution X-ray CT Facility Archive 0613
Rowe:
Hydrolagus_collei: Scans of the head of a preserved chimaera (Hydrolagus collie; San Juan Channel, Friday Harbor, WA; coll. 8/15/2001 by Adam Summers) for Timothy Rowe, Department of Geological Sciences, The University of Texas. Scanned by Richard Ketcham and Matthew Colbert 15 April 2002.
Due to rotational errors, the following sets of slices were regathered and integrated with the original scan images: 31-45, 136-150, and 331-345.
16bit (slices 1-348): 1024x1024 16-bit TIFF images. II, 150 kV, 0.2 mA, no filter, empty mount wedge with foam, no offset, slice thickness = 2 lines (= .1187 mm), S.O.D. 173 mm, 1200 views, 2 samples per view, interslice spacing = 2 lines (=0.1187 mm), field of reconstruction 50.0 mm (maximum field of view 56.535415 mm), reconstruction offset 7800, reconstruction scale 1500. Reconstructed off-center: x = 0, y = 2. Acquired with 15 slices per rotation. Total slices = 465.
Creator
Richard Ketcham ; Matthew Colbert
Date created
April 15, 2002
Date uploaded
March 21, 2024
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
444 MB
Image width
665
Image height
962
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.048800
Y pixel spacing
0.048800
Z pixel spacing
0.118700
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
465
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, IIS-9874781
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant IIS-9874781 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
none:none
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
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Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000613803: Head [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000613803: Head [CTImageSeries] [CT] (this media)