Media 000616681: Whole Test
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Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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GENERAL DETAILS Field Definitions

Media ID
000616681
Media type
Volumetric Image Series
Object element or part
whole test
Object represented
Object taxonomy
Entzia macrescens
Side
--
Orientation
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Short description
HRXCT scan - whole test
Full description
University of Texas High-Resolution X-ray CT Facility Archive Kemp: J_macrescens_2: Scans of a foram (Jadammina macrescens; CORE SB, 0-1 cm) for Andrew Kemp of Tufts University. Specimen scanned by Jessie Maisano 1 August 2023. Specimen superglued to top of toothpick. scan parameters: Zeiss. 20X, 70kV, 8.5W, 3.5s acquisition time, detector 13.1 mm, source -9 mm, XYZ [227, -17751, 202], camera bin 2, angle ±180, 3001 views, LE1 filter, dithering. Multi reference. Reconstructed with center shift 6.428, beam hardening 1, theta 0, byte scaling [-0.3, 2.5], binning 1, recon filter smooth (kernel size = 0.7). Total slices = 604.
Creator
Jessie Maisano
Date created
August 01, 2023
Date uploaded
March 28, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
313 MB
Image width
691
Image height
456
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.550000
Y pixel spacing
0.550000
Z pixel spacing
0.550000
Pixel spacing units
Micrometers
Slice thickness
--
Number of images in set
604

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 620 Versa x-ray microscope (xrm), The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
Creative Commons license
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Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, OCE-1942563
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant OCE-1942563 to Andrew Kemp. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UT-JSG:02 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
August 01, 2023
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000616681: Whole Test [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
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Event date
--
Software
--
Description
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Description attachment
None

Media produced by this event on MorphoSource

Media 000616681: Whole Test [CTImageSeries] [CT] (this media)