Media 000618400: Anterior Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000618400
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
Object taxonomy
Euchilichthys royauxi
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1484 Vigliotta/Friel: euchi: Scans of the body of a whole preserved Euchilichthys royauxi (CU 91380; oubangui River shoreline at uncompleted bridge at Mobaye, Basse-Kotto, Central African Republic, Africa; coll. Bills, Friel & Reid 27 February 2006) for Tom Vigliotta of Cornell University Museum of Vertebrates. Specimen scanned by Matthew Colbert 21 September 2006. Breakdown after slice 1064; corrupted slices 1065-1482 were discarded. 16bitrot: 1024x1024 16-bit TIFF images. II, 190 kV, 0.13 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.09599 mm), S.O.D. 137 mm, 1600 views, 2 samples per view, inter-slice spacing 2 lines (= 0.09599 mm), field of reconstruction 45 mm (maximum field of view 45.5783 mm), reconstruction offset 3700, reconstruction scale 5700. Acquired with 19 slices per rotation and 15 slices per set. Drift and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” with parameters “goodfile=374, driftlength=21” and “RK_SinoRingProcSimul” with default parameters. Last four duplicate slices of each set were deleted. Rotation correction processing done using IDL routine “DoRotationCorrection.” Total final slices = 840.
Creator
Matthew Colbert
Date created
September 21, 2006
Date uploaded
April 02, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.01 GB
Image width
1024
Image height
864
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.043950
Y pixel spacing
0.043950
Z pixel spacing
0.095990
Pixel spacing units
Millimeters
Slice thickness
--
Number of images in set
840

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Cornell University
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-0315963
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-0315963 to Lawrence Page. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object cumv:fish:91380 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
September 21, 2006
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
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Voltage
--
Power
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Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000618400: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000618400: Anterior Body [CTImageSeries] [CT] (this media)