Media 000621496: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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· Public

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GENERAL DETAILS Field Definitions

Media ID
000621496
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Brotogeris chrysopterus chrysosema
Side
--
Orientation
--
Short description
HRXCT scan - whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1032 Rowe: Brotogeris: Scans of the whole body of Brotogeris chrysopterus chrysosema (FMNH 330249; Brazil, Rondonia, Cachoeira Nazare, W bank Rio Jiparana, 100m, 21 Jun 1986; Habitat: river edge clearing, 10m up, with group of 10) for Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin, and DigiMorph. Specimen scanned by Matthew Colbert 1 June 2004. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, air wedge, no offset, slice thickness 2 lines (= 0.163 mm), S.O.D. 235 mm, 1400 views, 2 samples per view, inter-slice spacing 2 lines (= 0.163 mm), field of reconstruction 68 mm (maximum field of view 77.01035 mm), reconstruction offset 5300, reconstruction scale 2030. Acquired with 15 slices per rotation. Flash-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routine “RK_DeSpike” with default parameters. Rotation correction processing done by Rachel Racicot using IDL routine “DoRotationCorrection”. Total slices = 810.
Creator
Matthew Colbert
Date created
June 01, 2004
Date uploaded
April 16, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
999 MB
Image width
1005
Image height
898
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.066000
Y pixel spacing
0.066000
Z pixel spacing
0.163000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
810

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
Field Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DBI-1902242, IIS-0208675
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant IIS-0208675 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object fmnh:birds:330249 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
June 01, 2004
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000621496: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000621496: Whole Body [CTImageSeries] [CT] (this media)