Media 000097372: Whole Body, Stage 66
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000097372
Media type
Volumetric Image Series
Object element or part
whole body, stage 66
Object represented
Object taxonomy
Silurana tropicalis
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
December 03, 2019

FILE OBJECT DETAILS Field Definitions

File name
UC_H_003_Xenopus_Stage66.zip
File format(s)
ZIP archive, TIFF
File size
345 MB
Image width
1251
Image height
505
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.014522
Y pixel spacing
0.014522
Z pixel spacing
0.014522
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,667

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Gayani Senevirathne
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Gayani Senevirathne and colleagues provided access to these dataoriginally appearing in Senevirathne et al., 2020 (PNAS) , with data collection funded by the Brinson Foundation and the University of Chicago Biological Sciences. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object uc:herps:003 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Stephanie Baumgart, Gayani Senevirathne
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
333
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1400
Voltage
110
Power
0.0132
Amperage
120
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000097372: Whole Body, Stage 66 [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Stephanie Baumgart, Gayani Senevirathne
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000097372: Whole Body, Stage 66 [CTImageSeries] [Etc] (this media)