Media 000097479: Anterior Body [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

FILE OBJECT DETAILS

Media ID
000097479
Media type
CTImageSeries
File format(s)
image/tiff
File size
664 MB
Object element or part
anterior body
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1600 Cannatella: cchin: Scans of the head and forearms of Chiropterotriton chiropterus (MVZ 85602) for David Cannatella of the University of Texas at Austin, Department of Biology. Specimen scanned by Matthew Colbert 21 February 2007. Images flipped. 16bit: 1024x1024 16-bit TIFF images. II, 210 kV, 0.1 mA, intensity control on, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.02085 mm), S.O.D. 30 mm, 2000 views, 3 samples per view, inter-slice spacing 2 lines (= 0.02085 mm), field of reconstruction 9 mm (maximum field of view 9.947174 mm), reconstruction offset 7300, reconstruction scale 5300. Acquired with 19 slices per rotation and 15 slices per set. Flash and ring-removal processing done by Alison Mote based on correction of raw sinogram data using “RK_SinoDeSpike” and “RK_SinoRingProcSimul” with default parameters. Reconstructed with an angle of 11 degrees. Deleted last duplicate slice and first three duplicate slices of each rotation. Total final slices = 675.
Creator
--
Date created
February 21, 2007
Date uploaded
December 05, 2019
Image width
788
Image height
715
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.008790
Y pixel spacing
0.008790
Z pixel spacing
0.020850
Pixel spacing units
Mm
Number of images in set
675

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
--
IP holder
Museum of Vertebrate Zoology
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
James Hanken and David Wake provided access to these data originally appearing in Parra-Olea et al., 2020, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:amphibian and reptile specimens:85602 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
2000
Voltage
210
Power
--
Amperage
100
Surrounding material
empty container
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000097479: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details

Creator
Matthew Colbert
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000097479: Anterior Body [CTImageSeries] [CT] (this media)